Nettoyer en toute sécurité apt-get après une installation R défaillante à partir d'un référentiel ajouté

9

J'ai essayé d'installer un package, qui a échoué. Maintenant, chaque fois que j'utilise apt-get, j'obtiens une longue liste d'erreurs dpkg. J'ai essayé d'utiliser apt-get autoremove, mais j'obtiens le même tas d'erreurs. Existe-t-il un moyen sûr de nettoyer ce gâchis?

(py3) ilia@arriam-lab2-cpu:~$ sudo apt-get autoremove
Reading package lists... Done
Building dependency tree       
Reading state information... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
20 not fully installed or removed.
After this operation, 0 B of additional disk space will be used.
Setting up r-base-core (3.3.2-1trusty0) ...
Preserving user changes to /usr/share/bash-completion/completions/R (renamed from /etc/bash_completion.d/R)...
mv: cannot stat ‘/usr/share/bash-completion/completions/R’: No such file or directory
dpkg: error processing package r-base-core (--configure):
 subprocess installed post-installation script returned error exit status 1
dpkg: dependency problems prevent configuration of r-cran-boot:
 r-cran-boot depends on r-base-core (>= 3.2.1-2trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-boot depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.

dpkg: error processing package r-cran-boot (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-cluster:
 r-cran-cluster depends on r-base-core (>= 3.3.1-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-cluster depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.

dpkg: error processing package r-cran-cluster (--configure):
 dependency problems - leaving unconfigured
dpkg: depeNo apport report written because the error message indicates its a followup error from a previous failure.
                                                                                                                    No apport report written because the error message indicates its a followup error from a previous failure.
                                                            No apport report written because MaxReports is reached already
                                                                                                                          No apport report written because MaxReports is reached already
                      No apport report written because MaxReports is reached already
                                                                                    No apport report written because MaxReports is reached already
                                                                                                                                                  No apport report written because MaxReports is reached already
                                              No apport report written because MaxReports is reached already
                                                                                                            No apport report written because MaxReports is reached already
        No apport report written because MaxReports is reached already
                                                                      No apport report written because MaxReports is reached already
                                                                                                                                    No apport report written because MaxReports is reached already
                                ndency problems prevent configuration of r-cran-foreign:
 r-cran-foreign depends on r-base-core (>= 3.3.1-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-foreign depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.

dpkg: error processing package r-cran-foreign (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-mass:
 r-cran-mass depends on r-base-core (>= 3.2.2-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-mass depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.

dpkg: error processing package r-cran-mass (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-kernsmooth:
 r-cran-kernsmooth depends on r-base-core (>= 3.3.1-1trusty0); however:
  Package r-No apport report written because MaxReports is reached already
                                                                          No apport report written because MaxReports is reached already
                                                                                                                                        No apport report written because MaxReports is reached already
                                    No apport report written because MaxReports is reached already
                                                                                                  No apport report written because MaxReports is reached already
                                                                                                                                                                No apport report written because MaxReports is reached already
                                                            No apport report written because MaxReports is reached already
                                                                                                                          base-core is not configured yet.
 r-cran-kernsmooth depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.
 r-cran-kernsmooth depends on r-cran-mass; however:
  Package r-cran-mass is not configured yet.

dpkg: error processing package r-cran-kernsmooth (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-lattice:
 r-cran-lattice depends on r-base-core (>= 3.3.1-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-lattice depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.

dpkg: error processing package r-cran-lattice (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-nlme:
 r-cran-nlme depends on r-base-core (>= 3.3.1-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-nlme depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.
 r-cran-nlme depends on r-cran-lattice (>= 0.12-11.1); however:
  Package r-cran-lattice is not configured yet.

dpkg: error processing package r-cran-nlme (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-matrix:
 r-cran-matrix depends on r-base-core (>= 3.3.1-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-matrix depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.
 r-cran-matrix depends on r-cran-lattice (>= 0.12-11.1); however:
  Package r-cran-lattice is not configured yet.

dpkg: error processing package r-cran-matrix (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-mgcv:
 r-cran-mgcv depends on r-base-core; however:
  Package r-base-core is not configured yet.
 r-cran-mgcv depends on r-cran-nlme; however:
  Package r-cran-nlme is not configured yet.
 r-cran-mgcv depends on r-cran-matrix; however:
  Package r-cran-matrix is not configured yet.

dpkg: error processing package r-cran-mgcv (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-survival:
 r-cran-survival depends on r-base-core (>= 3.3.1-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-survival depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.
 r-cran-survival depends on r-cran-matrix; however:
  Package r-cran-matrix is not configured yet.

dpkg: error processing package r-cran-survival (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-rpart:
 r-cran-rpart depends on r-base-core (>= 3.2.1-2trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-rpart depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.
 r-cran-rpart depends on r-cran-survival; however:
  Package r-cran-survival is not configured yet.

dpkg: error processing package r-cran-rpart (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-class:
 r-cran-class depends on r-base-core (>= 3.2.2-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-class depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.
 r-cran-class depends on r-cran-mass; however:
  Package r-cran-mass is not configured yet.

dpkg: error processing package r-cran-class (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-nnet:
 r-cran-nnet depends on r-base-core (>= 3.2.3-4trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-nnet depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.

dpkg: error processing package r-cran-nnet (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-spatial:
 r-cran-spatial depends on r-base-core (>= 3.2.2-1trusty0); however:
  Package r-base-core is not configured yet.
 r-cran-spatial depends on r-api-3; however:
  Package r-api-3 is not installed.
  Package r-base-core which provides r-api-3 is not configured yet.

dpkg: error processing package r-cran-spatial (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-cran-codetools:
 r-cran-codetools depends on r-base-core; however:
  Package r-base-core is not configured yet.

dpkg: error processing package r-cran-codetools (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-recommended:
 r-recommended depends on r-base-core (>= 3.3.2-1trusty0); however:
  Package r-base-core is not configured yet.
 r-recommended depends on r-cran-boot (>= 1.2.19); however:
  Package r-cran-boot is not configured yet.
 r-recommended depends on r-cran-cluster (>= 1.9.6-2); however:
  Package r-cran-cluster is not configured yet.
 r-recommended depends on r-cran-foreign (>= 0.7-2); however:
  Package r-cran-foreign is not configured yet.
 r-recommended depends on r-cran-kernsmooth (>= 2.2.14); however:
  Package r-cran-kernsmooth is not configured yet.
 r-recommended depends on r-cran-lattice (>= 0.10.11); however:
  Package r-cran-lattice is not configured yet.
 r-recommended depends on r-cran-mgcv (>= 1.1.5); however:
  Package r-cran-mgcv is not configured yet.
 r-recommended depends on r-cran-nlme (>= 3.1.52); however:
  Package r-cran-nlme is not configured yet.
 r-recommended depends on r-cran-rpart (>= 3.1.20); however:
  Package r-cran-rpart i
dpkg: error processing package r-recommended (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-base:
 r-base depends on r-base-core (>= 3.3.2-1trusty0); however:
  Package r-base-core is not configured yet.
 r-base depends on r-recommended (= 3.3.2-1trusty0); however:
  Package r-recommended is not configured yet.

dpkg: error processing package r-base (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-base-dev:
 r-base-dev depends on r-base-core (>= 3.3.2-1trusty0); however:
  Package r-base-core is not configured yet.

dpkg: error processing package r-base-dev (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of r-base-html:
 r-base-html depends on r-base-core; however:
  Package r-base-core is not configured yet.

dpkg: error processing package r-base-html (--configure):
 dependency problems - leaving unconfigured
Errors were encountered while processing:
 r-base-core
 r-cran-boot
 r-cran-cluster
 r-cran-foreign
 r-cran-mass
 r-cran-kernsmooth
 r-cran-lattice
 r-cran-nlme
 r-cran-matrix
 r-cran-mgcv
 r-cran-survival
 r-cran-rpart
 r-cran-class
 r-cran-nnet
 r-cran-spatial
 r-cran-codetools
 r-recommended
 r-base
 r-base-dev
 r-base-html
E: Sub-process /usr/bin/dpkg returned an error code (1)

Mise à jour 1. Ce que (et comment) j'ai essayé d'installer.

echo "deb http://cran.fhcrc.org/bin/linux/ubuntu trusty/" | sudo tee -a /etc/apt/sources.list > /dev/null
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
sudo add-apt-repository ppa:marutter/rdev
sudo apt-get update
sudo apt-get install r-base r-base-dev

Mise à jour 2. Sortie demandée

(py3) ilia@arriam-lab2-cpu:~$ ls -l /etc/bash_completion.d/R /usr/share/bash-completion/completions/R
ls: cannot access /usr/share/bash-completion/completions/R: No such file or directory
-rw-r--r-- 1 root root 13596 nov.  1 04:17 /etc/bash_completion.d/R
apt  package-management  dpkg 
— Eli Korvigo
source
qu'avez-vous essayé d'installer et comment? Voir blog.bodhizazen.net/linux/…
— Panther
Pourriez-vous ajouter la sortie dels -l /etc/bash_completion.d/R /usr/share/bash-completion/completions/R
— user.dz
@ bodhi.zazen J'ai mis à jour la question
— Eli Korvigo
@ user.dz J'ai ajouté la sortie
— Eli Korvigo
1
Je déposerais un rapport de bogue auprès des personnes qui maintiennent le dépôt.
— Panther

Réponses:

16

  • Expliquer le problème

    Setting up r-base-core (3.3.2-1trusty0) ...
Preserving user changes to /usr/share/bash-completion/completions/R (renamed from /etc/bash_completion.d/R)...
mv: cannot stat ‘/usr/share/bash-completion/completions/R’: No such file or directory
dpkg: error processing package r-base-core (--configure):
 subprocess installed post-installation script returned error exit status 1

    Le script de post-installation ( /var/lib/dpkg/info/r-base-core.postinst) n'a pas vérifié si le /usr/share/bash-completion/completions/Rfichier existe avant d'essayer de le déplacer.

  • Solution rapide / solution de contournement

    1. Créez simplement une copie du fichier.

      sudo cp /etc/bash_completion.d/R /usr/share/bash-completion/completions/R

    2. Réparer l'installation interrompue

      sudo apt-get -f install

  • Fix définitive

    Comme l'a dit bodhi.zazen, envoyez un rapport de bogue au projet.

— user.dz
source
1
Existe-t-il un moyen de vous envoyer des fleurs?
— Vincent
1
@Vincent, lol, :) Ravi d'entendre que ma réponse vous aide.
— user.dz
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